Information for 7-AVAGDMAAMATVVACC (Motif 9)

C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
Reverse Opposite:
A C T G A C T G A C G T A C G T A C G T G C T A A C G T A C G T G C A T G A C T A C G T G T A C G A T C A G C T A C G T C G A T
p-value:1e-7
log p-value:-1.745e+01
Information Content per bp:1.546
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif42.11%
Number of Background Sequences with motif1316.7
Percentage of Background Sequences with motif2.87%
Average Position of motif in Targets56.0 +/- 22.2bp
Average Position of motif in Background50.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1/MA0148.3/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AVAGDMAAMATVVACC
CAAAGTAAACANNNN--
 A C G T C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AVAGDMAAMATVVACC--
WNAGTCADAVTGAAACTN
 C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AVAGDMAAMATVVACC
AAAAGTCAA--------
 A C G T C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AVAGDMAAMATVVACC
AAAGTAAACA------
 C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AVAGDMAAMATVVACC
AAAGTAAACA------
 C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AVAGDMAAMATVVACC
WAAGTAAAYA------
 C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AVAGDMAAMATVVACC
NCWRWGTAAACANSV---
 A C G T A C G T C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AVAGDMAAMATVVACC
AGAGGAA---------
 C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF2/MA0051.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AVAGDMAAMATVVACC
GGAAAGCGAAACCAAAAC
 A C G T A C G T C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AVAGDMAAMATVVACC
TATGTAAACANG----
 C G T A T G C A C T G A C T A G C A G T T G C A C G T A C G T A T G C A G T C A C G A T T C G A T G C A C G T A T A G C G T A C
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T