Information for 5-AGGCCTTTAAAACATA (Motif 6)

C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
Reverse Opposite:
C G A T C G T A C G A T A C T G A C G T C G A T C G A T A C G T C G T A C G T A C G T A C T A G A T C G A G T C G T A C C G A T
p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.773
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif15.79%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 2.2bp
Average Position of motif in Background52.1 +/- 35.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA-
AATGCAATAAAATTTAT
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
---CCAATAAAAA---
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
---CCAATAAAAC---
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
---CCAATAAAAA---
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
--NCYAATAAAA----
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
CTACCAATAAAATTCT
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
AACCCAATAAAATTCG
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGGCCTTTAAAACATA
--NGCAATTAAA----
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGGCCTTTAAAACATA
--CCYMATAAAA----
 C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGCCTTTAAAACATA
AAAGGTAATAAAATTT-
 A C G T C G T A A C T G A C T G A T G C A G T C C G A T C G A T A C G T C G T A C G T A C G T A C G T A G T A C C G T A A C G T C G T A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T