Information for 8-GCCACTAGAGGGC (Motif 7)

A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C
Reverse Opposite:
A T C G A G T C A G T C A T G C A G C T A G T C A G C T C G T A A C T G G A C T A C T G A C T G T A G C
p-value:1e-11
log p-value:-2.583e+01
Information Content per bp:1.777
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif22.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets62.9 +/- 13.5bp
Average Position of motif in Background50.9 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--GCCACTAGAGGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GCCACTAGAGGGC-------
GCCASCAGGGGGCGCYVNNG
 A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GCCACTAGAGGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCACTAGAGGGC-
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCCACTAGAGGGC
NSCACTYVAV---
 A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCACTAGAGGGC
ACCACTTGAA---
 A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCCACTAGAGGGC
-CCACTTGAA---
 A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCCACTAGAGGGC--
----CTTGAGTGGCT
 A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0101.1_Zic1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCCACTAGAGGGC
CACCCCCGGGGGGG
 A C G T A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCCACTAGAGGGC------
--NNNAAGGGGGCGGGNNN
 A T C G A G T C A G T C C T G A T A G C A C G T C T G A A C T G C T G A A T C G T A C G A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C