Information for 22-RGAMYCAGCCWGVCAS (Motif 41)

T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
Reverse Opposite:
A T G C G A C T A T C G A G T C A T G C C G T A A T C G A T C G A T G C G A C T C A T G C T A G A C G T A C G T A T G C A G C T
p-value:1e-7
log p-value:-1.721e+01
Information Content per bp:1.587
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.86%
Number of Background Sequences with motif570.5
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets38.4 +/- 21.9bp
Average Position of motif in Background48.0 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RGAMYCAGCCWGVCAS
GGGGCCGAGGCCTG----
 A C G T A C G T T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS
-----AGGCCTAG---
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS
---ACTAGCCAATCA-
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS
-----AGGCCTNG---
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:RGAMYCAGCCWGVCAS
------TGCCAA----
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS
-----CAGCC------
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS
----CGTGCCAAG---
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS----
---CAAATCCAGACATCACA
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RGAMYCAGCCWGVCAS--
-----CTGTCTGTCACCT
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:RGAMYCAGCCWGVCAS
----BCAGACWA----
 T C G A A T C G T G C A G T C A G A T C G T A C C T G A A T C G A T G C A T G C G C A T T A C G T C A G A T G C C T G A T A C G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T