Information for 10-CTGCCAAAGATTAAAA (Motif 18)

T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A
Reverse Opposite:
A C G T C G A T A G C T C A G T C T G A G C T A C G A T G A T C G A C T C A G T G A C T C A T G T A C G A G T C G T C A A C T G
p-value:1e-10
log p-value:-2.340e+01
Information Content per bp:1.667
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif77.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets47.4 +/- 30.1bp
Average Position of motif in Background53.9 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCAAAGATTAAAA-
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGCCAAAGATTAAAA-
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAAGATTAAAA
GGTGCCAAGT-------
 A C G T T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CTGCCAAAGATTAAAA-
-----AAAGATCAAAGG
 T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.58
Offset:9
Orientation:forward strand
Alignment:CTGCCAAAGATTAAAA
---------ATTAAA-
 T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTGCCAAAGATTAAAA
TTGCCAAG--------
 T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGCCAAAGATTAAAA-
-TGCCAAAATAAACANN
 T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

LEF1/MA0768.1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CTGCCAAAGATTAAAA----
-----AAAGATCAAAGGGTT
 T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAAGATTAAAA
CGTGCCAAG--------
 A C G T T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTGCCAAAGATTAAAA
-GGTTAAACATTAA--
 T G A C A C G T A C T G A T G C G T A C C T G A G C T A C G T A C T A G C G T A C A G T G A C T G C T A C T G A C G T A C G T A
A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T A C G T