Information for 2-VVCAATAAAA (Motif 2)

T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A
Reverse Opposite:
G C A T A G C T G A C T G A C T G C T A G A C T C A G T C T A G A T G C A T G C
p-value:1e-14
log p-value:-3.296e+01
Information Content per bp:1.609
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif9.67%
Number of Background Sequences with motif1138.4
Percentage of Background Sequences with motif3.74%
Average Position of motif in Targets48.7 +/- 26.6bp
Average Position of motif in Background49.5 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.93
Offset:1
Orientation:forward strand
Alignment:VVCAATAAAA-
-CCAATAAAAC
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:VVCAATAAAA-
-CCAATAAAAA
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.92
Offset:1
Orientation:forward strand
Alignment:VVCAATAAAA-
-CCAATAAAAA
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--VVCAATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.91
Offset:1
Orientation:forward strand
Alignment:VVCAATAAAA
-GCAATAAAA
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-VVCAATAAAA
AAGCCATAAAA
 A C G T T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.89
Offset:0
Orientation:forward strand
Alignment:VVCAATAAAA
NCYAATAAAA
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--VVCAATAAAA----
AACCCAATAAAATTCG
 A C G T A C G T T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.88
Offset:0
Orientation:forward strand
Alignment:VVCAATAAAA
NGCAATTAAA
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.88
Offset:0
Orientation:forward strand
Alignment:VVCAATAAAA-
GGTAATAAAAA
 T A C G T A C G G A T C G T C A C T G A C G A T C T G A C T G A T C G A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A