Information for 1-TGAGTGATGA (Motif 2)

A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
Reverse Opposite:
A C G T A G T C G T C A C G A T A G T C C G T A A G T C A C G T A G T C C T G A
p-value:1e-9
log p-value:-2.098e+01
Information Content per bp:1.892
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif8.45%
Number of Background Sequences with motif66.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets59.3 +/- 11.3bp
Average Position of motif in Background51.9 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGAGTGATGA
TGATTGATGA
 A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGAGTGATGA
TTTGATTGATGN
 A C G T A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGAGTGATGA
TTRAGTGSYK-
 A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGAGTGATGA-
ATGATKGATGRC
 A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

JDP2/MA0655.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGAGTGATGA
ATGAGTCAT--
 A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGAGTGATGA
GATGAGTCATN-
 A C G T A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGAGTGATGA
CTTGAGTGGCT-
 A C G T A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGAGTGATGA--
TGATTRATGGCY
 A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A A C G T A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGAGTGATGA--
NNANTGATTGATNTTN
 A C G T A C G T A C G T A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGAGTGATGA
TTGAGTGSTT-
 A C G T A G C T A C T G C G T A A C T G A C G T A C T G C G T A A C G T C T A G C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T