Information for 1-CCTCCACAGC (Motif 6)

G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C
Reverse Opposite:
A T C G A G T C A C G T A C T G A C G T A C T G A T C G C G T A A C T G A C T G
p-value:1e-6
log p-value:-1.414e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif22.22%
Number of Background Sequences with motif68.7
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets53.2 +/- 30.1bp
Average Position of motif in Background46.5 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CCTCCACAGC
----CACAGN
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

ZNF354C/MA0130.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCTCCACAGC
-ATCCAC---
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C
A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTCCACAGC
AAACCACAGC
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCACAGC-----
TCNCTTTACAGCGNNNT
 A C G T A C G T G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTCCACAGC------
-GAGCACAGCAGGACA
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTCCACAGC------
-CCACACAGCAGGAGA
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTCCACAGC-
NWAACCACADNN
 A C G T G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CCTCCACAGC-
------CAGCC
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CCTCCACAGC------
----CACAGCAGGGGG
 G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTCCACAGC
SSAATCCACANN
 A C G T A C G T G T A C A G T C A C G T A T G C A G T C C G T A A G T C C G T A A C T G A T G C
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C