Information for 8-RYTTTTATGR (Motif 7)

C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G
Reverse Opposite:
G A T C G T A C C G T A A G C T C G T A G T C A C G T A C T G A C T G A G A C T
p-value:1e-12
log p-value:-2.913e+01
Information Content per bp:1.655
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.29%
Number of Background Sequences with motif437.2
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets47.7 +/- 26.2bp
Average Position of motif in Background48.5 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:RYTTTTATGR-
--TTTTATTGC
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:RYTTTTATGR--
--TTTTATTRGN
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T A C G T
A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.91
Offset:2
Orientation:reverse strand
Alignment:RYTTTTATGR---
--TTTTATGGCTN
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:RYTTTTATGR-
-NTTTTATGAC
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:RYTTTTATGR-
-NTTTTATTGG
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T
A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:RYTTTTATGR--
-NTTTTATTACN
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T A C G T
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:RYTTTTATGR--
DGWTTTATGRCN
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RYTTTTATGR-
-TTTTTATTGG
 C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T
A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--RYTTTTATGR----
NNANTTTTATTGGNNN
 A C G T A C G T C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--RYTTTTATGR----
NGANTTTTATGGCTCN
 A C G T A C G T C T G A G A C T G A C T C G A T A C G T G C A T T C G A C G A T C A T G C T A G A C G T A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T