Information for 4-ATGTATTTTGTAA (Motif 6)

C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C C G T A C G T A C G T A C G T A A C G T C G T A A G T C C G T A A C G T
p-value:1e-7
log p-value:-1.772e+01
Information Content per bp:1.940
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 14.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGTATTTTGTAA
ATGAATATTC---
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

NFIL3/MA0025.1/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ATGTATTTTGTAA---
-----TTATGTAACAT
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:ATGTATTTTGTAA-
----RTTATGYAAB
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

CEBPA/MA0102.3/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:ATGTATTTTGTAA-
---NATTGTGCAAT
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A A C G T
A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATGTATTTTGTAA
ATGCATAATTCA-
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

HLF/MA0043.2/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ATGTATTTTGTAA--
---NGTTACGTAANN
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C A T G T C A G G C A T C A G T C T G A A G T C T C A G G A C T T G C A C G T A A G C T C T A G

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATGTATTTTGTAA---
-ANATTTTTGCAANTN
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A A C G T A C G T A C G T
A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATGTATTTTGTAA
WYATGCATWATGCAT
 A C G T A C G T C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

TEF/MA0843.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ATGTATTTTGTAA--
---NGTTACGTAATN
 C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G G A C T C G A T T C G A A G T C C T A G A G C T G C T A C G T A A G C T T C G A

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATGTATTTTGTAA
TCATGAATWATTCAT
 A C G T A C G T C G T A A C G T A C T G C G A T C G T A A C G T C G A T A C G T A C G T A C T G A C G T C G T A C G T A
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T