Information for 7-CTGGCACTGAGGGAAC (Motif 16)

G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T G T A C A G T C A G T C A G C T A G T C C G T A A C T G A G C T A C T G A G T C A G T C C G T A A C T G
p-value:1e-4
log p-value:-1.131e+01
Information Content per bp:1.928
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.3 +/- 29.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGGCACTGAGGGAAC
-TGGCACCATGCCAA-
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCACTGAGGGAAC
NTTGGCANN--------
 A C G T G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTGGCACTGAGGGAAC
-ATGCCCTGAGGC---
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTGGCACTGAGGGAAC
CTTGGCANNNTGCCAA-
 A C G T G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTGGCACTGAGGGAAC
TTGGCA----------
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTGGCACTGAGGGAAC
--TGCCCTGAGGGCA-
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:CTGGCACTGAGGGAAC
----SCCTSAGGSCAW
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A C G T A C G T A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CTGGCACTGAGGGAAC
------ATGATGCAAT
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCACTGAGGGAAC
GGTTGGCAT---------
 A C G T A C G T G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTGGCACTGAGGGAAC
--TGCCCTGAGGGCA-
 G T A C A C G T A C T G A C T G A G T C C T G A A G T C A C G T A C T G C T G A A C T G A C T G A C T G C G T A C G T A A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T