Information for 4-AAMAACTAMKMWM (Motif 6)

C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
Reverse Opposite:
C A G T C G A T A C G T T G C A A C G T A C G T G T C A A C T G A C G T A C G T A C T G A C G T A C G T
p-value:1e-7
log p-value:-1.705e+01
Information Content per bp:1.821
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.60%
Number of Background Sequences with motif18.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.7 +/- 29.0bp
Average Position of motif in Background47.6 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AAMAACTAMKMWM
NNNTAACAATTATAN--
 A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAMAACTAMKMWM
ATAAACAATTAAACA-
 A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A A C G T

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAMAACTAMKMWM---
CAAAACCAATTAATTT
 C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AAMAACTAMKMWM
NTTNAGAACAATTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T A C G T A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAMAACTAMKMWM
AAAAACCAATTAAGAA-
 A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A A C G T

POL007.1_BREd/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAMAACTAMKMWM
NANANAC-------
 A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AAMAACTAMKMWM
TNNAGAACAATANATNN-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AAMAACTAMKMWM
ATGTCACAACAACAC--
 A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AAMAACTAMKMWM
TAGTGAACAATAGATTT-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----AAMAACTAMKMWM
CAAACAACAACACCT---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A G T A C C G T A C G T A A G T C A C G T C G T A G T C A A C G T G T C A C G T A G T C A
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T A C G T A C G T A C G T