Information for 1-TGTCCTTTCT (Motif 4)

C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T
Reverse Opposite:
G T C A T C A G C G T A C T G A C G T A T C A G T A C G C G T A T G A C G C T A
p-value:1e-7
log p-value:-1.746e+01
Information Content per bp:1.686
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif24.14%
Number of Background Sequences with motif2894.5
Percentage of Background Sequences with motif5.90%
Average Position of motif in Targets56.9 +/- 28.9bp
Average Position of motif in Background49.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGTCCTTTCT--
TGACCTTTNCNT
 C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T A C G T A C G T
A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGTCCTTTCT--
NNGCACCTTTCTCC
 A C G T A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TGTCCTTTCT--
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TGTCCTTTCT--
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTTTCT
GTGACCTT---
 A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTCCTTTCT
ACTTTCGTTTCT
 A C G T A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TGTCCTTTCT
BNTGDCCTTG--
 A C G T A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTTTCT
CTGACCTTTG-
 A C G T C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTCCTTTCT
TGACCTYA--
 C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGTCCTTTCT---
---CCTTTGTTTT
 C G A T A C T G G C A T A T G C A G T C G C A T G A C T G C A T A G T C C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T