Information for 4-AAGGGBWMWAAGA (Motif 9)

G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A
Reverse Opposite:
G A C T G A T C G A C T G C A T G C A T C A G T G C T A T G A C A G T C G T A C G A T C G A C T A C G T
p-value:1e-5
log p-value:-1.282e+01
Information Content per bp:1.500
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif2516.1
Percentage of Background Sequences with motif2.99%
Average Position of motif in Targets51.6 +/- 19.5bp
Average Position of motif in Background50.2 +/- 39.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAGGGBWMWAAGA-----
--GGGGTCAAAGTCCAAT
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RXRB/MA0855.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
--GGGGTCAAAGGTCA
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Rarb/MA0857.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
AAAGGTCAAAAGGTCA
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
-AGAGTCCAAAGTCCA
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

RXRG/MA0856.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
--GGGGTCAAAGGTCA
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
CANAGNNCAAAGTCCA
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
--GGGGTCAAAGGTCA
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAGGGBWMWAAGA
---GGAACAAAGR
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAGGGBWMWAAGA---
AAAGGTAATAAAATTT
 G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGGGBWMWAAGA--
TTAAGGGGATTAACTAC
 A C G T A C G T G T C A C G T A C T A G A C T G C T A G A C T G C G A T G T C A C G T A C G T A C T G A C T A G C T G A A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C