Information for 2-WKRCATACWGAAG (Motif 6)

C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
Reverse Opposite:
G A T C A G C T A G C T A G T C C G T A A C T G C G A T T C G A A C G T A T C G A G C T G T A C G C T A
p-value:1e-7
log p-value:-1.647e+01
Information Content per bp:1.674
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif55.56%
Number of Background Sequences with motif1200.8
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets44.2 +/- 33.3bp
Average Position of motif in Background49.6 +/- 40.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--WKRCATACWGAAG
ATTTGCATACAATGG
 A C G T A C G T C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:WKRCATACWGAAG
--BCAGACWA---
 C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---WKRCATACWGAAG
AGGTGNCAGACAG---
 A C G T A C G T A C G T C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--WKRCATACWGAAG---
WNAGTCADAVTGAAACTN
 A C G T A C G T C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G A C G T A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-WKRCATACWGAAG-
BAGTCATANTGAAAG
 A C G T C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G A C G T
A C T G C G T A A T C G C G A T T G A C C G T A C G A T G C T A G T C A C G A T T C A G C T G A C T G A C T G A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:WKRCATACWGAAG
--CCAGACAG---
 C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---WKRCATACWGAAG
AGGTGHCAGACA----
 A C G T A C G T A C G T C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:WKRCATACWGAAG
--CCAGACRSVB-
 C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

ZBTB18/MA0698.1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:WKRCATACWGAAG---
---CATCCAGATGTTC
 C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C

TEAD3/MA0808.1/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:WKRCATACWGAAG
--ACATTCCA---
 C G A T A C T G C T G A A T G C C G T A A G C T G C T A A G T C C G A T C T A G C T G A T C G A C T A G
A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A A C G T A C G T A C G T