Information for 3-ATGGCGGABC (Motif 6)

C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
Reverse Opposite:
A C T G T A G C C A G T A G T C A G T C A C T G A G T C A T G C T G C A G A C T
p-value:1e-11
log p-value:-2.587e+01
Information Content per bp:1.737
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.49%
Number of Background Sequences with motif172.1
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets41.6 +/- 25.6bp
Average Position of motif in Background54.4 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--ATGGCGGABC
TAATGGCGGNC-
 A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATGGCGGABC
CAAGATGGCGGC--
 A C G T A C G T A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCGGABC---
NAGANTGGCGGGGNGNA
 A C G T A C G T A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATGGCGGABC
CAAGATGGCGGC--
 A C G T A C G T A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ATGGCGGABC
RGKGGGCGGAGC
 A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:ATGGCGGABC
----CGGAGC
 C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

Sp1(Zf)/Promoter/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCGGABC-
GGGGGCGGGGCC
 A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C A C G T
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATGGCGGABC---
-NCGCGGACGTTG
 C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C A C G T A C G T A C G T
A C G T T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGGCGGABC--
AGGGGGCGGGGCTG
 A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C A C G T A C G T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

SP2/MA0516.1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCGGABC
GGGNGGGGGCGGGGC
 A C G T A C G T A C G T A C G T A C G T C T G A A C G T A T C G A C T G A G T C C T A G C T A G G T C A A T C G T G A C
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C