Information for 2-AGAGGGHAATCBA (Motif 4)

C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
Reverse Opposite:
G C A T T C G A A C T G C T G A C G A T A C G T C G T A A T G C A G T C G T A C A G C T A T G C C G A T
p-value:1e-11
log p-value:-2.629e+01
Information Content per bp:1.741
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.6 +/- 29.6bp
Average Position of motif in Background42.6 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGHAATCBA-
NAGATWNBNATCTNN
 A C G T C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAGGGHAATCBA
TRAGGTCA-----
 C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGAGGGHAATCBA
TNNGGGCAG----
 C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGAGGGHAATCBA--
--AGGGGAATCCCCT
 C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A A C G T A C G T
A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGHAATCBA
MTGATGCAAT----
 A C G T C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGAGGGHAATCBA
ATGATGCAAT----
 A C G T C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T A C G T A C G T

JUN/MA0488.1/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGHAATCBA
AAGATGATGTCAT----
 A C G T A C G T A C G T A C G T C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAGGGHAATCBA
-TATGCWAATBAV
 C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGAGGGHAATCBA
TTATGCAAAT---
 C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGAGGGHAATCBA
AGRGGTCA-----
 C G T A A T C G C T G A A C T G A C T G A T C G G C A T C G T A G C T A A G C T A G T C A C G T C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T