Information for 1-ATTTATGACC (Motif 2)

C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
Reverse Opposite:
C A T G C T A G C A G T A T G C G C T A C G A T C G T A G T C A C G T A G A C T
p-value:1e-12
log p-value:-2.963e+01
Information Content per bp:1.694
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.19%
Number of Background Sequences with motif439.3
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets59.1 +/- 28.8bp
Average Position of motif in Background50.0 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATGACC---
NNAATTAATGACCNNN
 A C G T A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0012.1_Cdx1/Jaspar

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATGACC---
NAATTTTATTACCTNN
 A C G T A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATGACC---
NAATTTTATTACCNNN
 A C G T A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGACC
TGATTTATGGCC
 A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGACC
TGATTTATGGCC
 A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATGACC---
ANNTTTTACGACNTNN
 A C G T A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-ATTTATGACC
NTTTTATGAC-
 A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---ATTTATGACC
NTGATTTATGGCC
 A C G T A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-ATTTATGACC
NTTTTACGAC-
 A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--ATTTATGACC
DGWTTTATGRCN
 A C G T A C G T C T G A G C A T C A G T G C A T G C T A C G A T T A C G G T C A A G T C G T A C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C