Information for 2-CAGGHAAHTTDCT (Motif 3)

A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T
Reverse Opposite:
C G T A A C T G G A T C C T G A C G T A C G T A A C G T A C G T C G T A A T G C A G T C A C G T A T C G
p-value:1e-4
log p-value:-1.072e+01
Information Content per bp:1.738
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif159.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets79.0 +/- 15.0bp
Average Position of motif in Background48.7 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CAGGHAAHTTDCT---
------ATTTCCTGTN
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

PH0009.1_Bsx/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGHAAHTTDCT---
CAGGTAATTACCTCAG
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CAGGHAAHTTDCT---
------ACTTCCTGNT
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A C T G G C A T

PH0074.1_Hoxd1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGGHAAHTTDCT---
TAAACTAATTAGCTGTA
 A C G T A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CAGGHAAHTTDCT--
-----CACTTCCTCT
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T

PH0024.1_Dlx5/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGGHAAHTTDCT---
GGGGTAATTAGCTCTG
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAGGHAAHTTDCT
--GGGAATTTCC-
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

PH0154.1_Prrx1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CAGGHAAHTTDCT---
GTAACTAATTAACTACT
 A C G T A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0045.1_Hoxa1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGGHAAHTTDCT---
ACGGTAATTAGCTCAG
 A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T A C G T A C G T
T C G A T G A C C T A G A C T G A G C T G T C A C G T A A C G T A C G T C T G A T A C G A G T C G A C T G A T C C T G A C T A G

PH0053.1_Hoxa6/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CAGGHAAHTTDCT-
NTNAGGTAATTACCTT
 A C G T A C G T A T G C G T C A C T A G A T C G G A C T G T C A C G T A G A C T A C G T A G C T C A T G A G T C A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T