Information for 5-GACAGACAGACAGACA (Motif 20)

A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
Reverse Opposite:
A G C T A T C G A G C T A G T C A C G T A C T G G A C T A G T C A C G T A C T G C G A T A G T C A C G T A T C G A G C T A G T C
p-value:1e-4
log p-value:-9.937e+00
Information Content per bp:1.873
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets12.0 +/- 0.0bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GACAGACAGACAGACA
AGGTGNCAGACAG-------
 A C G T A C G T A C G T A C G T A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GACAGACAGACAGACA
TGAGTGACAGSC-----
 A C G T A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGACAGACA
-CCAGACAG-------
 A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GACAGACAGACAGACA
AGGTGHCAGACA--------
 A C G T A C G T A C G T A C G T A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGACAGACA
-CCAGACRSVB-----
 A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GACAGACAGACAGACA
TGGCAGNCTGCCAG---
 A C G T A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GACAGACAGACAGACA
NTGATTGACAGN------
 A C G T A C G T A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GACAGACAGACAGACA
-AGCAACAGCCGCACC
 A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGACAGACA
-BCAGACWA-------
 A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GACAGACAGACAGACA---
-WNAGTCADAVTGAAACTN
 A C T G C T G A T A G C C G T A A C T G C G T A T A G C C G T A A C T G C T G A G T A C C G T A A C T G C T G A T A G C C T G A A C G T A C G T A C G T
A C G T G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G