Information for 1-WWAMAAAKSAGWWTGW (Motif 1)

C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
Reverse Opposite:
C G A T G T A C C G T A C G A T C G A T A G T C C G A T T A G C G T C A A C G T A C G T A G C T A C G T C G A T C G T A C G T A
p-value:1e-7
log p-value:-1.808e+01
Information Content per bp:1.791
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 25.0bp
Average Position of motif in Background80.6 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----WWAMAAAKSAGWWTGW
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----WWAMAAAKSAGWWTGW
AGAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----WWAMAAAKSAGWWTGW
ATAAGAACAAAGGACTA---
 A C G T A C G T A C G T A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-WWAMAAAKSAGWWTGW
AAAACAAAGG-------
 A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-WWAMAAAKSAGWWTGW
AAACATAATGAGGTTGC
 A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:WWAMAAAKSAGWWTGW
-RACAAWGG-------
 C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:WWAMAAAKSAGWWTGW
--ACAAAGGNBCCT--
 C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-WWAMAAAKSAGWWTGW
GACGATAATGAGCTTGC
 A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Sox1/MA0870.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:WWAMAAAKSAGWWTGW-
--AACAATGNTATTGTT
 C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A A C G T
A C G T A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-WWAMAAAKSAGWWTGW
RNAACAATGG-------
 A C G T C G A T C G A T G C T A G T C A C T G A C G T A C G T A A C G T A T C G C G T A A C T G C G T A C G T A A C G T A C T G C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T