Information for 19-TCCATAAACT (Motif 43)

A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G T A
p-value:1e-2
log p-value:-6.674e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets88.0 +/- 0.0bp
Average Position of motif in Background51.1 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCCATAAACT-
NGYCATAAAWCH
 A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCCATAAACT
GCAATAAAA-
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCCATAAACT
AAGCCATAAAA-
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCCATAAACT---
--AATAAACAATN
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCCATAAACT
GTCATAAAAN
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCCATAAACT---
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCCATAAACT---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCCATAAACT----
ACGGCCATAAAATTAAT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCCATAAACT----
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TCCATAAACT
CCAATAAAAC
 A C G T A G T C A G T C C G T A A C G T C G T A C G T A C G T A A G T C A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C