Information for 2-RARRWKCCWYRAT (Motif 3)

C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C C T G A C G A T A C T G A C T G G T A C C G A T A G C T A G C T A C G T A G T C
p-value:1e-7
log p-value:-1.706e+01
Information Content per bp:1.779
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif30.00%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets44.0 +/- 29.4bp
Average Position of motif in Background53.7 +/- 7.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ONECUT3/MA0757.1/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RARRWKCCWYRAT
AAAAAATCAATAAT
 A C G T C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

ZNF410/MA0752.1/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RARRWKCCWYRAT----
TCCATCCCATAATACTC
 C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

PB0162.1_Sfpi1_2/Jaspar

Match Rank:3
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RARRWKCCWYRAT---
--GGTTCCNNAATTTG
 C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C T G C G A T G C A T A G T C A G T C A C T G C A T G G C T A C G T A C G A T G A C T C A G T C A T G

ONECUT2/MA0756.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RARRWKCCWYRAT
AAAAAATCGATAAT
 A C G T C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RARRWKCCWYRAT---
NNNATTCCTCGAAAGN
 C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T A C G T A C G T A C G T
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A

ONECUT1/MA0679.1/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RARRWKCCWYRAT
AAAAAATCGATAAT
 A C G T C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ZNF143/MA0088.2/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:RARRWKCCWYRAT------
---TACCCACAATGCATTG
 C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-RARRWKCCWYRAT
GGAAATTCCC----
 A C G T C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:RARRWKCCWYRAT
-GCATTCCAGN--
 C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-RARRWKCCWYRAT
GGAAATTCCC----
 A C G T C T A G C G T A C T G A C T G A C G T A A C T G A G T C A G T C C G T A A G C T C T A G C G T A A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T