Information for 2-CACCCTGGTTGAG (Motif 3)

A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
Reverse Opposite:
A T G C C G A T A T G C C T G A C G T A A G T C A G T C C G T A C T A G A T C G C T A G A G C T A C T G
p-value:1e-10
log p-value:-2.452e+01
Information Content per bp:1.816
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 26.4bp
Average Position of motif in Background29.4 +/- 8.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACCCTGGTTGAG--
GAGCCCTTGTCCCTAA
 A C G T A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACCCTGGTTGAG
--CCTTTGTT---
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

ZBTB7C/MA0695.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACCCTGGTTGAG
NTCGGTGGTCGC-
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C A C G T

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CACCCTGGTTGAG
----TTGATTGN-
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CACCCTGGTTGAG
CCTGCTGAGH---
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CACCCTGGTTGAG
---ACTAGTTAAC
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

ZBTB7A/MA0750.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CACCCTGGTTGAG
-TCGGTGGTCGCN
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A C G T A C G T G T A C C A T G A C T G C A G T T A C G C T A G C A G T A G T C A T C G A G T C T G A C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CACCCTGGTTGAG
-NCCATTGTTC--
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CACCCTGGTTGAG
CAGTGTGGTCGC-
 A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CACCCTGGTTGAG---
GAAAACTAGTTAACATC
 A C G T A G T C C T G A A G T C A T G C A G T C A C G T A C T G A C T G A C G T A G C T A T C G C G T A A T C G A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C