Information for 4-TTTGAGACGC (Motif 29)

A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C
Reverse Opposite:
C T A G A G T C A C T G A C G T A G T C C G A T A G T C C G T A C G T A C T G A
p-value:1e-6
log p-value:-1.402e+01
Information Content per bp:1.925
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.1 +/- 24.3bp
Average Position of motif in Background43.2 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TTTGAGACGC---
CTACTTGGATACGGAAT
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T A C G T
A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTGAGACGC
TTTGAAACCG
 A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C
A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTGAGACGC
GGTTAGAGACCT
 A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTTGAGACGC-
CTTGAGTGGCT
 A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGAGACGC--
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGAGACGC--
NNNATTTTACGACNNTN
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTTGAGACGC--
ANNTTTTACGACNTNN
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0076.1_Hoxd11/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGAGACGC--
ANNATTTTACGACNTNA
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTTGAGACGC----
ANANNTGATACCCNATN
 A C G T A C G T A C G T A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T A C G T A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

Atf1/MA0604.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TTTGAGACGC-
---ATGACGTA
 A G C T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A C T G A G T C A C G T
A C G T A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A