Information for 2-ATGCACATAC (Motif 20)

C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T T G C A C G A T A C T G A C G T A C T G A G T C C G T A C G A T
p-value:1e-7
log p-value:-1.765e+01
Information Content per bp:1.860
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif3.65%
Number of Background Sequences with motif91.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets54.0 +/- 26.8bp
Average Position of motif in Background54.2 +/- 40.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ATGCACATAC----
AGCGGCACACACGCAA
 A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----ATGCACATAC--
CAGATGTGCACATACGT
 A C G T A C G T A C G T A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ATGCACATAC----
CGAAGCACACAAAATA
 A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATGCACATAC-
ATATGCAAATNNN
 A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATGCACATAC
ATATGCAAAT--
 A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ATGCACATAC
TTATGCAAAT--
 A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ATGCACATAC--
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGCACATAC
ATGMATATDC
 C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ATGCACATAC--
--GCACGTACCC
 C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATGCACATAC--
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A G C A T A C T G A G T C C G T A G T A C C G T A A C G T C G T A A G T C A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A