Information for 10-CATGATTNRCACNTGA (Motif 17)

A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
Reverse Opposite:
C G A T A T G C G T C A A G T C C T A G A C G T A C T G A G C T A G T C C T G A C T G A A G C T T G A C C G T A G A C T A C T G
p-value:1e-7
log p-value:-1.780e+01
Information Content per bp:1.733
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 21.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CATGATTNRCACNTGA
----ATTAACACCT--
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA
----TTTCACACCT--
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T A C G T A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA
----KTTCACACCT--
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA
-----TTMACACCTT-
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T

Id2/MA0617.1/Jaspar

Match Rank:5
Score:0.59
Offset:8
Orientation:forward strand
Alignment:CATGATTNRCACNTGA
--------GCACGTGA
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA
----TTTCACACCTN-
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T A C G T A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA
-BTGABTGACAGS---
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

Arntl/MA0603.1/Jaspar

Match Rank:8
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA--
--------NCACGTGACN
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CATGATTNRCACNTGA
-NTGATTGACAGN---
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

TFEC/MA0871.1/Jaspar

Match Rank:10
Score:0.57
Offset:7
Orientation:forward strand
Alignment:CATGATTNRCACNTGA-
-------ATCACGTGAC
 A G T C C T G A C G A T A C T G C T G A A G C T A G C T C T A G C T G A A G T C C G T A A G T C C T A G A C G T A T C G G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C