Information for 4-TAAKGAMCTTMRACCC (Motif 5)

A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C
Reverse Opposite:
C A T G C T A G A T C G A G C T A G T C A C T G G C T A C G T A A C T G A C T G A C G T G A T C G T C A A C G T G A C T G T C A
p-value:1e-7
log p-value:-1.693e+01
Information Content per bp:1.618
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif0.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 3.0bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC
TAATTNVATTAN----
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G A C G T A C G T A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC-
---TGACCTTTGACCCC
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C

RXRB/MA0855.1/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC-
---TGACCTTTGACCCC
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC-
---TGACCTTTGACCCC
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC-
---TGACCTTTGACCTN
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC--
---TGACCTCTGACCCCN
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C A C G T A C G T
A C G T A C G T A C G T G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC-
---TGACCTTTGACCTC
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C A C G T
A C G T A C G T A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TAAKGAMCTTMRACCC
NNAATTAATGACCNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C A C G T A C G T A C G T A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC
TAATYNRATTAR----
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G A C G T A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TAAKGAMCTTMRACCC
TAATTAAATTA-----
 A C G T C T G A C G T A A C G T C A T G T G C A G T A C G T A C C G A T C G A T G T A C C T A G T C G A A T G C A G T C G A T C
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T