Information for 12-TGGCTAAGGTCTAAAT (Motif 27)

A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C G T A A C T G C G T A A G T C A G T C A C G T A C G T C G T A A C T G A G T C A G T C C G T A
p-value:1e-3
log p-value:-8.070e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets10.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBX21/MA0690.1/Jaspar

Match Rank:1
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGGCTAAGGTCTAAAT
-----AAGGTGTGAA-
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.53
Offset:-8
Orientation:reverse strand
Alignment:--------TGGCTAAGGTCTAAAT
NTNNNNNGTTGCTANGGNNCANA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGGCTAAGGTCTAAAT
------AGGTGTTAAT
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTAAGGTCTAAAT
NNCGTTGCTATGGNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGGCTAAGGTCTAAAT-
-GGCAAAAGTCCAATAA
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TGGCTAAGGTCTAAAT
-----AAGGTGTGAAA
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

Rarb/MA0857.1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TGGCTAAGGTCTAAAT----
----AAAGGTCAAAAGGTCA
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TGGCTAAGGTCTAAAT
-----TAGGTGTGAAG
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TGGCTAAGGTCTAAAT
TAGGGCAAAGGTCA----
 A C G T A C G T A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TGGCTAAGGTCTAAAT---
--GAAAAGGTGTGAAAATT
 A C G T A C T G A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C G T A G T C A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T