Information for 1-GGATGGGHTCAAA (Motif 2)

C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A
Reverse Opposite:
C G A T A G C T C G A T A C T G C G T A C A T G A G T C A G T C A G T C C T G A C G A T A G T C A G T C
p-value:1e-8
log p-value:-1.957e+01
Information Content per bp:1.729
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif36.36%
Number of Background Sequences with motif62.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets62.2 +/- 13.2bp
Average Position of motif in Background50.9 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GGATGGGHTCAAA
----NGGATTAN-
 C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A
A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGATGGGHTCAAA---
CTCCAGGGGTCAATTGA
 A C G T C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGATGGGHTCAAA---
NTNNNGGGGTCANGNNN
 A C G T C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0133.1_Hic1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGATGGGHTCAAA-
NNNNTTGGGCACNNCN
 A C G T A C G T C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGATGGGHTCAAA--
AGAGCGGGGTCAAGTA
 A C G T C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGATGGGHTCAAA---
GGCGAGGGGTCAAGGGC
 A C G T C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGATGGGHTCAAA--
---RGGGCACTAACY
 C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0167.1_Sox13_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGATGGGHTCAAA
GTATTGGGTGGGTAATT-
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGATGGGHTCAAA
--CCAGGAACAG-
 C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GGATGGGHTCAAA-----
---AGNGTTCTAATGANN
 C T A G C T A G C G T A A G C T C T A G A C T G A C T G G A T C C G A T A G T C C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A