Information for 3-AGAGTAAGAC (Motif 14)

C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A C G T C G T A A G T C A C G T A G T C A C G T
p-value:1e-3
log p-value:-8.070e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 0.0bp
Average Position of motif in Background59.2 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAGTAAGAC-
AGGTGHCAGACA
 A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTAAGAC--
AGGTGNCAGACAG
 A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

SPIB/MA0081.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGTAAGAC
AGAGGAA---
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAGTAAGAC-
AGGGTAACAGC
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGAGTAAGAC
GAAAGTGAAAGT-
 A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAGTAAGAC
AGAGGAAGTG
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

PB0094.1_Zfp128_1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTAAGAC-----
TTNGGGTACGCCNNANN
 A C G T A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGAGTAAGAC---
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

SPIC/MA0687.1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGAGTAAGAC
AAAAAGAGGAAGTA
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C
G T C A C T G A G T C A G T C A C G T A T A C G T G C A A T C G C A T G G C T A T G C A C T A G G C A T G T C A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGAGTAAGAC-
CAGGTAAGTAT
 C G T A A C T G C G T A A C T G A C G T C G T A C G T A A C T G C G T A A G T C A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T