p-value: | 1e-6 |
log p-value: | -1.478e+01 |
Information Content per bp: | 1.959 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 1.73% |
Number of Background Sequences with motif | 10.3 |
Percentage of Background Sequences with motif | 0.02% |
Average Position of motif in Targets | 51.8 +/- 33.5bp |
Average Position of motif in Background | 49.7 +/- 23.9bp |
Strand Bias (log2 ratio + to - strand density) | 1.6 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 1 |
Score: | 0.73 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA- ---CTTGGCAA |
|
|
|
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer
Match Rank: | 2 |
Score: | 0.72 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA TTGCGTGCVA |
|
|
|
NFIA/MA0670.1/Jaspar
Match Rank: | 3 |
Score: | 0.66 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA-- --NNTTGGCANN |
|
|
|
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer
Match Rank: | 4 |
Score: | 0.65 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA-- BTGABTGACAGS |
|
|
|
Dux/MA0611.1/Jaspar
Match Rank: | 5 |
Score: | 0.65 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA TTGATTGN-- |
|
|
|
NFIX/MA0671.1/Jaspar
Match Rank: | 6 |
Score: | 0.63 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA-- ---NTTGGCANN |
|
|
|
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer
Match Rank: | 7 |
Score: | 0.63 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA-- NTGATTGACAGN |
|
|
|
SD0002.1_at_AC_acceptor/Jaspar
Match Rank: | 8 |
Score: | 0.61 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA- NNACTTGCCTT |
|
|
|
PB0029.1_Hic1_1/Jaspar
Match Rank: | 9 |
Score: | 0.61 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --TTGCTTGCCA---- NGTAGGTTGGCATNNN |
|
|
|
NFIC/MA0161.1/Jaspar
Match Rank: | 10 |
Score: | 0.60 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | TTGCTTGCCA- -----TGCCAA |
|
|
|