Information for 6-GCCTAGCAGA (Motif 16)

A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A
Reverse Opposite:
A C G T A T G C A G C T A C T G A G T C C G A T T C G A C T A G A T C G A G T C
p-value:1e-8
log p-value:-1.967e+01
Information Content per bp:1.839
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif167.5
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets47.3 +/- 25.9bp
Average Position of motif in Background51.1 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAGA
AGGCCTAG----
 A C G T A C G T A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAGA
AGGCCTNG----
 A C G T A C G T A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCCTAGCAGA
---CAGCC--
 A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCCTAGCAGA-
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCCTAGCAGA---
-CACAGCAGGGGG
 A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCCTAGCAGA-----
DCHCAGCAGGRGGCC
 A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCTAGCAGA
TGCCCAGNHW-
 A C G T A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAGA---
CCGCATAGCAACGGA
 A C G T A C G T A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GCCTAGCAGA-----
-----CCAGACRSVB
 A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCCTAGCAGA---
CCACACAGCAGGAGA
 A C G T A C G T A C T G A T G C G A T C A G C T C G T A A C T G G T A C T C G A A T C G C G T A A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A