Information for 15-GAGGGCAAAGTCT (Motif 20)

A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T
Reverse Opposite:
T C G A A T C G T G C A A T G C G A C T A G C T A G C T A T C G T G A C A T G C G A T C G A C T T A G C
p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.545
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 20.7bp
Average Position of motif in Background56.5 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAGGGCAAAGTCT---
GGGGTCAAAGTCCAAT
 A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGTCT-
AGAGTCCAAAGTCCA
 A C G T A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAGGGCAAAGTCT-
CANAGNNCAAAGTCCA
 A C G T A C G T A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGGGCAAAGTCT
TNNGGGCAG-----
 A C G T A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGGGCAAAGTCT-
TAGGGCAAAGGTCA
 A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAGTCT
-AGGTCAAGGTCA
 A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGGCAAAGTCT
-AGGTCAAGGTCA
 A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGTCT-
GTAGGGCAAAGGTCA
 A C G T A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGTCT-
AGGGGTCAGAGGTCA
 A C G T A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T A C G T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGGGCAAAGTCT
RGKGGGCGGAGC--
 A C G T A T C G C T G A C T A G T A C G A C T G T A G C T C G A T C G A C T G A T A C G A C G T T A G C A G C T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T