Information for 3-TCAAAGTCCA (Motif 7)

C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
Reverse Opposite:
G C A T C A T G A C T G T G C A A G T C G A C T A C G T A C G T A C T G G C T A
p-value:1e-12
log p-value:-2.884e+01
Information Content per bp:1.688
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif8.79%
Number of Background Sequences with motif1641.9
Percentage of Background Sequences with motif3.40%
Average Position of motif in Targets55.0 +/- 26.2bp
Average Position of motif in Background51.4 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAGTCCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.86
Offset:-6
Orientation:forward strand
Alignment:------TCAAAGTCCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA--
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGTCCA----
GGCAAAAGTCCAATAA
 A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.79
Offset:1
Orientation:forward strand
Alignment:TCAAAGTCCA-
-CAAAGGTCAG
 C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGTCCA----
TCTCAAAGGTCACCTG
 A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TCAAAGTCCA
ACATCAAAGG---
 A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T C G A T T G A C G T C A C G T A C G T A A C T G A C G T T G A C G T A C C G T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A