Information for 11-GAGAGAGAGA (Motif 30)

C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A
Reverse Opposite:
A C G T T A G C A G C T A G T C A C G T G T A C C G A T G T A C G C A T A G T C
p-value:1e-5
log p-value:-1.301e+01
Information Content per bp:1.732
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.75%
Number of Background Sequences with motif1008.5
Percentage of Background Sequences with motif2.09%
Average Position of motif in Targets47.7 +/- 24.6bp
Average Position of motif in Background50.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGA-
AGGTGNCAGACAG
 A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGAGAGAGA---
-GGTTAGAGACCT
 C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A A C G T A C G T A C G T
A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA-------
GACAGAGATATCAGTGT
 C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGA--
GAAAGTGAAAGT
 C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A A C G T A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

Gata1/MA0035.3/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGAGA
ANAGATAAGAA
 A C G T C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGAGA
AGGTGHCAGACA
 A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PB0140.1_Irf6_2/Jaspar

Match Rank:7
Score:0.53
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGAGAGA
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GAGAGAGAGA
---AGAGGAA
 C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A
A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGAGA---
TTGACCGAGAATTCC
 A C G T A C G T C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGAGAGAGA---
--GGGCGGGAAGG
 C T A G C G T A A C T G C G T A A C T G C G T A C T A G C T G A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G