Information for 6-CTTGGCAAAG (Motif 17)

A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
Reverse Opposite:
G T A C G A C T G C A T A G C T A C T G A T G C A G T C C G T A G T C A A C T G
p-value:1e-9
log p-value:-2.165e+01
Information Content per bp:1.734
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.56%
Number of Background Sequences with motif432.7
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets56.7 +/- 30.1bp
Average Position of motif in Background50.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAAAG
CTTGGCAA--
 A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAAAG
NNTTGGCANN-
 A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCAAAG--
TACCATAGCAACGGT
 A C G T A C G T A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCAAAG--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAAAG
NTTGGCANN-
 A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTTGGCAAAG
-TTGGCA---
 A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------CTTGGCAAAG------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTTGGCAAAG
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTGGCAAAG-
SCCTAGCAACAG
 A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAAAG
GGTTGGCAT--
 A C G T A G T C C A G T C G A T C T A G T A C G T G A C C T G A C G T A C T G A A C T G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T