Information for 3-TTCACCCTGCCGT (Motif 4)

A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T
Reverse Opposite:
C G T A G T A C A C T G A C T G A G T C C G T A A C T G A C T G A C T G A C G T A C T G C G T A C G T A
p-value:1e-10
log p-value:-2.432e+01
Information Content per bp:1.945
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.8 +/- 27.1bp
Average Position of motif in Background90.6 +/- 1.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTCACCCTGCCGT-
--CCCCCTGCTGTG
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTCACCCTGCCGT--
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTCACCCTGCCGT
TTCCCCCTAC---
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTCACCCTGCCGT-
GACCCCCCGCTGTG
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TTCACCCTGCCGT--
GACCCCCCGCTGTGC
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TTCACCCTGCCGT--
-----CCTGCTGAGH
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TTCACCCTGCCGT
NNCNTGACCCCGCTCT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTCACCCTGCCGT--
GACCCCCCGCTGCGC
 A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TTCACCCTGCCGT-
GGTCANNGTGACCTN
 A C G T A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TTCACCCTGCCGT
AGGTCACCCTGACCT
 A C G T A C G T A C G T A C G T A G T C C G T A G T A C A G T C A G T C A C G T A C T G A G T C G T A C A C T G A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T