Information for 5-GGCAGGCAGAAHGTVA (Motif 5)

A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
Reverse Opposite:
A G C T A C G T C G T A G T A C C G T A C G A T A C G T G T A C A G C T C T A G A G T C A T G C A C G T A C T G A T G C A G T C
p-value:1e-10
log p-value:-2.418e+01
Information Content per bp:1.721
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif13.79%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.8 +/- 16.6bp
Average Position of motif in Background55.5 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGAAHGTVA
-CCAGACAG-------
 A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGCAGGCAGAAHGTVA
-VCAGGTRDRY-----
 A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCAGGCAGAAHGTVA
TTGCCAAG----------
 A C G T A C G T A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGAAHGTVA
AGGTGNCAGACAG-------
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCAGAAHGTVA
ATGCCAGACN--------
 A C G T A C G T A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCAGGCAGAAHGTVA
AAGGCAAGTGT-------
 A C G T A C G T A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGCAGGCAGAAHGTVA
--CACGCA--------
 A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGAAHGTVA
NGTGGGCAT-----------
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGAAHGTVA
-CCAGACRSVB-----
 A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGAAHGTVA
TNNGGGCAG-----------
 A C G T A C G T A C G T A C G T A C T G A T C G A G T C C G T A A T C G T C A G A G T C C T G A A C T G C G T A C G T A G A C T A C T G C G A T T C G A C T G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T