Information for 4-AGCTTGTATA (Motif 6)

C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A
Reverse Opposite:
C G A T G C T A G A C T C G T A T G A C T C G A C G T A A C T G A T G C G C A T
p-value:1e-13
log p-value:-3.198e+01
Information Content per bp:1.726
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.01%
Number of Background Sequences with motif565.6
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets44.7 +/- 26.7bp
Average Position of motif in Background49.0 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:AGCTTGTATA---
-CCTTTTATAGNC
 C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----AGCTTGTATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----AGCTTGTATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGCTTGTATA--
-GCTCGTAAAAA
 C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T A C G T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCTTGTATA----
AAACCTCGTAAAATTT
 A C G T A C G T C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCTTGTATA----
AAAGCTCGTAAAATTT
 A C G T A C G T C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGCTTGTATA
AAGCTTG----
 A C G T C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGCTTGTATA-
---TTGTTTAC
 C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T
A C G T A C G T A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C

FOXG1/MA0613.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGCTTGTATA-
---TTGTTTAC
 C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T
A C G T A C G T A C G T C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AGCTTGTATA---
-SCHTGTTTACAT
 C G T A T A C G G T A C C G A T A G C T A C T G A C G T C T G A C G A T C G T A A C G T A C G T A C G T
A C G T T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T