Information for 2-GCCATCTTGTGGC (Motif 3)

C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
Reverse Opposite:
T C A G G A T C G T A C G T C A A T G C G T C A T C G A T A C G T C G A A C G T T A C G C A T G G A T C
p-value:1e-18
log p-value:-4.240e+01
Information Content per bp:1.660
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.06%
Number of Background Sequences with motif258.5
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets54.1 +/- 24.4bp
Average Position of motif in Background51.3 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----GCCATCTTGTGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.84
Offset:-4
Orientation:reverse strand
Alignment:----GCCATCTTGTGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.83
Offset:-7
Orientation:forward strand
Alignment:-------GCCATCTTGTGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GCCATCTTGTGGC
GCNGCCATCTTG----
 A C G T A C G T A C G T C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCCATCTTGTGGC
GCCGCCATCTTG----
 A C G T A C G T A C G T C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCATCTTGTGGC
GCCATCTGTT---
 C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCATCTTGTGGC
---RTCATGTGAC
 C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
A C G T A C G T A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCCATCTTGTGGC---
----NNHTGTGGTTWN
 C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G

RUNX1/MA0002.2/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCCATCTTGTGGC--
----GTCTGTGGTTT
 C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCATCTTGTGGC
ACCATCTGTT---
 C A T G G A T C A G T C G T C A A G C T A T G C A G C T C A G T T A C G A C G T A C T G C T A G A G T C
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T