Information for 13-GCTTGCCTGA (Motif 18)

C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A
Reverse Opposite:
A G C T A T G C C G T A A C T G A T C G G A T C G T C A C G T A C T A G G T A C
p-value:1e-9
log p-value:-2.086e+01
Information Content per bp:1.796
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif200.2
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets51.1 +/- 32.2bp
Average Position of motif in Background48.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGCCTGA
NNACTTGCCTT-
 A C G T A C G T C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GCTTGCCTGA
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GCTTGCCTGA
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCTTGCCTGA--
--TTGCGTGCVA
 C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGCCTGA
NNACTTACCTN-
 A C G T A C G T C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCTTGCCTGA--
GGGGCTYGKCTGGGA
 A C G T A C G T A C G T C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A A C G T A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTTGCCTGA
CCTCACCTG-
 C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCTTGCCTGA----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A C G T C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTTGCCTGA-
-ATTTCCTGTN
 C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A A C G T
A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCTTGCCTGA-
-ATTGCATCAT
 C A T G A G T C C G A T A C G T C T A G A T G C G T A C C G A T A T C G C T G A A C G T
A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T