Information for 6-RCAGCGCCSYCTGGMA (Motif 5)

C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A
Reverse Opposite:
A C G T A C G T A G T C A G T C C G T A A C T G C T A G A T C G A C T G A C T G A G T C A C T G A G T C A C G T A C T G G A C T
p-value:1e-14
log p-value:-3.343e+01
Information Content per bp:1.880
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.7 +/- 24.5bp
Average Position of motif in Background37.9 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

INSM1/MA0155.1/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:RCAGCGCCSYCTGGMA
----CGCCCCCTGACA
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A
A C G T A C G T A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RCAGCGCCSYCTGGMA--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RCAGCGCCSYCTGGMA----
-TAGCGCCCCCTGGTGGCCA
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RCAGCGCCSYCTGGMA
----TGCCCCCGGGCA
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A
A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCAGCGCCSYCTGGMA----
ANAGTGCCACCTGGTGGCCA
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:RCAGCGCCSYCTGGMA
----TGCCCCAGGGCA
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A
A C G T A C G T A C G T A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A

TFAP2B/MA0811.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:RCAGCGCCSYCTGGMA
----TGCCCCAGGGCA
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A
A C G T A C G T A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.57
Offset:7
Orientation:forward strand
Alignment:RCAGCGCCSYCTGGMA-
-------GGTCTGGCAT
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RCAGCGCCSYCTGGMA-
---TTGCCCTAGGGCAT
 C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A A C G T
A C G T A C G T A C G T C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RCAGCGCCSYCTGGMA
GGTCCCGCCCCCTTCTC
 A C G T C T G A A G T C C G T A A C T G A G T C A C T G A G T C A G T C T A G C A G T C A G T C A C G T A C T G A C T G T G A C G T C A
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C