Information for 18-RAAACTCGAGWTT (Motif 24)

T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
Reverse Opposite:
C G T A C G T A C G T A G T A C A C G T G A T C C T A G C T G A A C T G C G A T G C A T A C G T A G T C
p-value:1e-6
log p-value:-1.462e+01
Information Content per bp:1.632
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.6 +/- 30.3bp
Average Position of motif in Background51.6 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RAAACTCGAGWTT
RSCACTYRAG---
 T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RAAACTCGAGWTT
AAAAAATCGATAAT
 A C G T T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RAAACTCGAGWTT
AAAAAATCGATAAT
 A C G T T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

PH0111.1_Nkx2-2/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---RAAACTCGAGWTT-
ATAACCACTTGAAAATT
 A C G T A C G T A C G T T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RAAACTCGAGWTT
GWAAYHTGAKMC-
 T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RAAACTCGAGWTT
AAAAAATCAATAAT
 A C G T T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RAAACTCGAGWTT
AGAAACGAAAGT--
 A C G T T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:RAAACTCGAGWTT---
-TTGACCGAGAATTCC
 T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PH0113.1_Nkx2-4/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---RAAACTCGAGWTT
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:RAAACTCGAGWTT
-CCACTTGAA---
 T C A G G T C A C G T A G C T A G T A C G A C T G A T C C T A G C G T A A C T G G C A T G C A T C G A T
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T