Information for 3-AACGATGGTT (Motif 6)

C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C T G A C G T A C G T
p-value:1e-4
log p-value:-1.124e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------AACGATGGTT-
NNTAAAAACGATGTTNT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
G A T C G A C T C G A T T C G A C G T A C G T A G C T A G C T A A G T C C A T G C G T A C G A T A C T G C G A T C G A T C G A T G C A T

SOX9/MA0077.1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AACGATGGTT
GAACAATGG--
 A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AACGATGGTT
VRAACAATGG--
 A C G T A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AACGATGGTT
AACAAAGG--
 C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AACGATGGTT
RAACAATGGN-
 A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AACGATGGTT
GAACAATGGN-
 A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AACGATGGTT
AAAACAATGG--
 A C G T A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AACGATGGTT--
AATGAACAATGGAATT
 A C G T A C G T A C G T A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AACGATGGTT
RNAACAATGG--
 A C G T A C G T C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AACGATGGTT
RACAAWGG--
 C G T A C G T A A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T