Information for 12-AGACAGAGCATATGCA (Motif 23)

C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C A C G T A G T C A C G T A C T G A C G T A G T C A C G T
p-value:1e-4
log p-value:-1.124e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:AGACAGAGCATATGCA-
-------GHATATKCAT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

BHLHE22/MA0818.1/Jaspar

Match Rank:2
Score:0.60
Offset:6
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
------ACCATATGTT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A G C T G T C A G A C T A C T G A G C T G A C T

Atoh1/MA0461.2/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
------AACATATGTT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

Bhlha15/MA0607.1/Jaspar

Match Rank:4
Score:0.58
Offset:7
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
-------CCATATGT-
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
------ACCATATGTT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A C G T G A C T

BHLHE23/MA0817.1/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGACAGAGCATATGCA-
-----AAACATATGTTT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T

OLIG1/MA0826.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
------AACATATGTT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A G T A C C T G A A C G T T G C A G C A T A C T G A C G T G A C T

OLIG2/MA0678.1/Jaspar

Match Rank:8
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
------ACCATATGGT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G A C T G A C C T G A A C G T T G C A G A C T C A T G A C T G G A C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:AGACAGAGCATATGCA-
-------GAATATTCAT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

NEUROD2/MA0668.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AGACAGAGCATATGCA
------GCCATATGGT
 C G T A A C T G C G T A A G T C C G T A A C T G C G T A A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T