Information for 1-HAAVCAGGACVGTVCT (Motif 1)

G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
Reverse Opposite:
G T C A A C T G A C T G T G C A A G T C A C G T A C T G C G A T A T G C A G T C A C G T A C T G A C T G A C G T A G C T C A T G
p-value:1e-8
log p-value:-1.929e+01
Information Content per bp:1.661
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif75.00%
Number of Background Sequences with motif309.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets34.2 +/- 25.8bp
Average Position of motif in Background46.6 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:HAAVCAGGACVGTVCT
--CACAGN--------
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--HAAVCAGGACVGTVCT
TGTAAACAGGA-------
 A C G T A C G T G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:3
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--HAAVCAGGACVGTVCT
GCAAAACATTACTA----
 A C G T A C G T G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.51
Offset:5
Orientation:forward strand
Alignment:HAAVCAGGACVGTVCT
-----AGGTCA-----
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:HAAVCAGGACVGTVCT
--ANCAGGATGT----
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:HAAVCAGGACVGTVCT
-AAYTAGGTCA-----
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:HAAVCAGGACVGTVCT--
----CAGGCCNNGGCCNN
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZEB1/MA0103.2/Jaspar

Match Rank:8
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:HAAVCAGGACVGTVCT
----CAGGTGAGG---
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--HAAVCAGGACVGTVCT
TATAAGTAGGTCAA----
 A C G T A C G T G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:HAAVCAGGACVGTVCT
-ATCAAGGTCA-----
 G A T C C T G A G T C A T A G C A G T C T G C A A C T G A T C G G C T A A G T C T C G A T C A G A C G T T A G C T G A C A C G T
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T