Information for 9-CTTAAATCTACCT (Motif 12)

A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T C G T A A C T G C G T A A C G T A C G T A C G T C G T A C G T A A C T G
p-value:1e-5
log p-value:-1.157e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets7.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTTAAATCTACCT
GGCCATAAATCAC---
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTTAAATCTACCT
GGCCATAAATCA----
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTTAAATCTACCT
GGCCATAAATCA----
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTTAAATCTACCT
GCCATAAATCA----
 A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTTAAATCTACCT--
-----RYHYACCTGB
 A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CTTAAATCTACCT
AATCCCTTTGATCTATC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTTAAATCTACCT
--CAAATCACTG-
 A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTTAAATCTACCT
NGYCATAAAWCH----
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAATCTACCT-
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

FOXH1/MA0479.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTTAAATCTACCT
-TCCAATCCACA-
 A G T C A C G T A C G T C G T A C G T A C G T A A C G T A G T C A C G T C G T A A G T C A G T C A C G T
A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T