Information for 8-TTGTGTCTAAGCC (Motif 11)

A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A C G T C G T A A C T G C G T A A G T C C G T A A G T C C G T A C G T A
p-value:1e-5
log p-value:-1.157e+01
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif25.00%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets73.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0158.1_Rfx3_2/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTGTCTAAGCC-----
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TTGTGTCTAAGCC
-----GCTAATCC
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.56
Offset:7
Orientation:forward strand
Alignment:TTGTGTCTAAGCC--
-------TAATCCCN
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTGTGTCTAAGCC-
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TTGTGTCTAAGCC----
------CTAATCCTCTT
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TTGTGTCTAAGCC-
-----CTTAATCCC
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TTGTGTCTAAGCC
NNNCCATTGTGTNAN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TTGTGTCTAAGCC-
------ATAATCCC
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TTGTGTCTAAGCC-
------TTAATCCC
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TTGTGTCTAAGCC
---TGTCTAGACG
 A C G T A C G T A C T G A C G T A C T G A C G T A G T C A C G T C G T A C G T A A C T G A G T C A G T C
A C G T A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G