Information for 13-CCCTTTTATA (Motif 18)

A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A
Reverse Opposite:
A C G T C G T A A C G T C T G A C G T A C G T A C T G A T A C G A C T G A C T G
p-value:1e-8
log p-value:-2.068e+01
Information Content per bp:1.902
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets45.9 +/- 25.2bp
Average Position of motif in Background45.7 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTTATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----CCCTTTTATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.80
Offset:1
Orientation:forward strand
Alignment:CCCTTTTATA---
-CCTTTTATAGNC
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CCCTTTTATA---
---TTTTATTRGN
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCCTTTTATA---
---TTTTATKRGG
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CCCTTTTATA----
AATCCCTTTGATCTATC
 A C G T A C G T A C G T A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CCCTTTTATA--
---TTTTATTGC
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCCTTTTATA--
--NTTTTATTGG
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T
A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCCTTTTATA----
---TTTTATGGCTN
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CCCTTTTATA
---TTTAAT-
 A G T C A G T C A T G C A G C T A C G T A C G T A G C T C G T A A C G T G T C A
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T